PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g092050.2.1
Common NameLOC101244632
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 647aa    MW: 72002.3 Da    PI: 7.11
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g092050.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.91.4e-14319378155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +++Aa+ ++ a++k++g
  Solyc02g092050.2.1 319 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEDKAARSYDLAALKYWG 378
                         78*******************988886678446**********99*************98 PP

2AP245.71.6e-14423472355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Solyc02g092050.2.1 423 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 472
                         9***************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-11319378IPR001471AP2/ERF domain
CDDcd000183.21E-20319386No hitNo description
SuperFamilySSF541713.4E-15319388IPR016177DNA-binding domain
PROSITE profilePS5103218.597320386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-14320387IPR001471AP2/ERF domain
SMARTSM003802.2E-27320392IPR001471AP2/ERF domain
PRINTSPR003674.0E-6321332IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-17421482IPR016177DNA-binding domain
CDDcd000185.36E-25421482No hitNo description
Gene3DG3DSA:3.30.730.104.1E-18422480IPR001471AP2/ERF domain
PROSITE profilePS5103219.177422480IPR001471AP2/ERF domain
SMARTSM003807.5E-34422486IPR001471AP2/ERF domain
PfamPF008472.8E-9423472IPR001471AP2/ERF domain
PRINTSPR003674.0E-6462482IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MKSLGNDDNS SNNNNNNWLG FSLSPHINSL EGPLTDHHHS TQPGSSSDVQ SSVPIRFSPT  60
HLNYPAMYYE GDNATLFSSL SAMPLKSDGS LCIMKGFNRS QQPQGMISST PKLEDFFGDA  120
AMGSHHYEGC NRGGMAHSLH NIYYNQHQDN ETSNSQDFLN HIQENTRHQQ QQQNYPDFSV  180
FRGHEVYHST EQGKTECSNI QVPTLTGDEM SGMNNWVSRN YQNQTGHALE QNMIGCMADN  240
GAESGSVGAM TYGDFKSLSL SMSPGSQSSC VTGTQTQQIS PTLTDCIAIE TKKRGSEKAN  300
NQKQIVHRKS IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCKKEGQSRK GRQVYLGGYD  360
MEDKAARSYD LAALKYWGPS THINFPLENY QQELEEMKNM TRQEYVAHLR RKSSGFSRGA  420
SMYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGVNAVTNFD  480
ISRYDVERIM ASNTLLAGDL ARRKKETETS KEICNQNLIA NASHQGEVNI QNKEENGNAV  540
EWTMSLYQSS SPGMDTNSMS STMLQGQMDE SARINTHLSN DSSLVTSLGS SREVSPAKNN  600
GHLMHNFAMP QSAPKLIPSP ATNITSWISS AQLRPNVPVF AAWTDA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231948.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X2
SwissprotQ389141e-164ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLK4BD020.0K4BD02_SOLLC; Uncharacterized protein
STRINGSolyc02g092050.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20742460
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-134AP2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]